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r-bindrcpp 0.2.2 — Rcpp interface to active bindings

This package provides an easy way to fill an environment with active bindings that call a C++ function.

r-biobase 2.42.0 — Base functions for Bioconductor

This package provides functions that are needed by many other packages on Bioconductor or which replace R functions.

r-bioccheck 1.18.0 — Executes Bioconductor-specific package checks

This package contains tools to perform additional quality checks on R packages that are to be submitted to the Bioconductor repository.

r-biocgenerics 0.28.0 — S4 generic functions for Bioconductor

This package provides S4 generic functions needed by many Bioconductor packages.

r-biocinstaller 1.32.1 — Install Bioconductor packages

This package is used to install and update R packages from Bioconductor, CRAN, and Github.

r-biocmanager 1.30.4 — Access the Bioconductor project package repository

This package provides a convenient tool to install and update Bioconductor packages.

r-biocneighbors 1.0.0 — Nearest Neighbor Detection for Bioconductor packages

This package implements exact and approximate methods for nearest neighbor detection, in a framework that allows them to be easily switched within Bioconductor packages or workflows. The exact algorithm is implemented using pre-clustering with the k-means algorithm. Functions are also provided to search for all neighbors within a given distance. Parallelization is achieved for all methods using the BiocParallel framework.

r-biocparallel 1.16.6 — Bioconductor facilities for parallel evaluation

This package provides modified versions and novel implementation of functions for parallel evaluation, tailored to use with Bioconductor objects.

r-biocstyle 2.10.0 — Bioconductor formatting styles

This package provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.

r-biocviews 1.50.10 — Bioconductor package categorization helper

The purpose of biocViews is to create HTML pages that categorize packages in a Bioconductor package repository according to keywords, also known as views, in a controlled vocabulary.

r-biomart 2.38.0 — Interface to BioMart databases

biomaRt provides an interface to a growing collection of databases implementing the http://www.biomart.org. The package enables retrieval of large amounts of data in a uniform way without the need to know the underlying database schemas or write complex SQL queries. Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene, Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt users direct access to a diverse set of data and enable a wide range of powerful online queries from gene annotation to database mining.

r-biostrings 2.50.2 — String objects and algorithms for biological sequences

This package provides memory efficient string containers, string matching algorithms, and other utilities, for fast manipulation of large biological sequences or sets of sequences.

r-biovizbase 1.30.1 — Basic graphic utilities for visualization of genomic data

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

r-bit 1.1-14 — Class for vectors of 1-bit booleans

This package provides bitmapped vectors of booleans (no NAs), coercion from and to logicals, integers and integer subscripts, fast boolean operators and fast summary statistics. With bit class vectors of true binary booleans, TRUE and FALSE can be stored with 1 bit only.

r-bit64 0.9-7 — S3 class for vectors of 64 bit integers

The bit64 package provides serializable S3 atomic 64 bit (signed) integers that can be used in vectors, matrices, arrays and data.frames. Methods are available for coercion from and to logicals, integers, doubles, characters and factors as well as many elementwise and summary functions. Many fast algorithmic operations such as match and order support interactive data exploration and manipulation and optionally leverage caching.

r-bitops 1.0-6 — Bitwise operations

This package provides functions for bitwise operations on integer vectors.

r-blob 1.1.1 — Simple S3 Class for representing vectors of binary data

Raw vectors in R are useful for storing a single binary object. What if you want to put a vector of them in a data frame? The blob package provides the blob object, a list of raw vectors, suitable for use as a column in data frame.

r-blockfest 1.6 — Bayesian calculation of region-specific fixation index

This package provides an R implementation of an extension of the BayeScan software for codominant markers, adding the option to group individual SNPs into pre-defined blocks. A typical application of this new approach is the identification of genomic regions, genes, or gene sets containing one or more SNPs that evolved under directional selection.

r-blockmodeling 0.3.4 — Generalized and classical blockmodeling of valued networks

This package is primarily meant as an implementation of generalized blockmodeling for valued networks. In addition, measures of similarity or dissimilarity based on structural equivalence and regular equivalence (REGE algorithms) can be computed and partitioned matrices can be plotted.

r-bookdown 0.9 — Authoring books and technical documents with R markdown

This package provides output formats and utilities for authoring books and technical documents with R Markdown.

r-boot 1.3-20 — Bootstrap functions for R

This package provides functions and datasets for bootstrapping from the book "Bootstrap Methods and Their Application" by A.C. Davison and D.V. Hinkley (1997, CUP), originally written by Angelo Canty for S.

r-bootstrap 2017.2 — Functions for the book "An Introduction to the Bootstrap"

This package provides software and data for the book "An Introduction to the Bootstrap" by B. Efron and R. Tibshirani, 1993, Chapman and Hall. This package is primarily provided for projects already based on it, and for support of the book. New projects should preferentially use the recommended package "boot".

r-brew 1.0-6 — Templating framework for report generation

The brew package implements a templating framework for mixing text and R code for report generation. The template syntax is similar to PHP, Ruby's erb module, Java Server Pages, and Python's psp module.

r-broom 0.5.1 — Convert statistical analysis objects into tidy data frames

This package provides tools to convert statistical analysis objects from R into tidy data frames, so that they can more easily be combined, reshaped and otherwise processed with tools like dplyr, tidyr and ggplot2. The package provides three S3 generics: tidy, which summarizes a model's statistical findings such as coefficients of a regression; augment, which adds columns to the original data such as predictions, residuals and cluster assignments; and glance, which provides a one-row summary of model-level statistics.

r-bseqsc 1.0-1.fef3f3e — Deconvolution of bulk sequencing experiments using single cell data

BSeq-sc is a bioinformatics analysis pipeline that leverages single-cell sequencing data to estimate cell type proportion and cell type-specific gene expression differences from RNA-seq data from bulk tissue samples. This is a companion package to the publication "A single-cell transcriptomic map of the human and mouse pancreas reveals inter- and intra-cell population structure." Baron et al. Cell Systems (2016) https://www.ncbi.nlm.nih.gov/pubmed/27667365.

r-bsgenome 1.50.0 — Infrastructure for Biostrings-based genome data packages

This package provides infrastructure shared by all Biostrings-based genome data packages and support for efficient SNP representation.

r-bsgenome-celegans-ucsc-ce10 1.4.0 — Full genome sequences for Worm

This package provides full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings objects.

r-bsgenome-celegans-ucsc-ce6 1.4.0 — Full genome sequences for Worm

This package provides full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce6, May 2008) and stored in Biostrings objects.

r-bsgenome-dmelanogaster-ucsc-dm3 1.4.0 — Full genome sequences for Fly

This package provides full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in Biostrings objects.

r-bsgenome-dmelanogaster-ucsc-dm3-masked 1.3.99 — Full masked genome sequences for Fly

This package provides full masked genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsgenome-dmelanogaster-ucsc-dm6 1.4.1 — Full genome sequences for Fly

This package provides full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6) and stored in Biostrings objects.

r-bsgenome-hsapiens-1000genomes-hs37d5 0.99.1 — Full genome sequences for Homo sapiens

This package provides full genome sequences for Homo sapiens from 1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.

r-bsgenome-hsapiens-ucsc-hg19 1.4.0 — Full genome sequences for Homo sapiens

This package provides full genome sequences for Homo sapiens as provided by UCSC (hg19, February 2009) and stored in Biostrings objects.

r-bsgenome-hsapiens-ucsc-hg19-masked 1.3.99 — Full masked genome sequences for Homo sapiens

This package provides full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects. The sequences are the same as in BSgenome.Hsapiens.UCSC.hg19, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bsgenome-mmusculus-ucsc-mm10 1.4.0 — Full genome sequences for Mouse

This package provides full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored in Biostrings objects.

r-bsgenome-mmusculus-ucsc-mm9 1.4.0 — Full genome sequences for Mouse

This package provides full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, July 2007) and stored in Biostrings objects.

r-bsgenome-mmusculus-ucsc-mm9-masked 1.3.99 — Full masked genome sequences for Mouse

This package provides full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm9, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

r-bumphunter 1.24.5 — Find bumps in genomic data

This package provides tools for finding bumps in genomic data in order to identify differentially methylated regions in epigenetic epidemiology studies.

r-cairo 1.5-9 — R graphics device using Cairo graphics library

This package provides a Cairo graphics device that can be use to create high-quality vector (PDF, PostScript and SVG) and bitmap output (PNG,JPEG,TIFF), and high-quality rendering in displays (X11 and Win32). Since it uses the same back-end for all output, copying across formats is WYSIWYG. Files are created without the dependence on X11 or other external programs. This device supports alpha channel (semi-transparent drawing) and resulting images can contain transparent and semi-transparent regions. It is ideal for use in server environments (file output) and as a replacement for other devices that don't have Cairo's capabilities such as alpha support or anti-aliasing. Backends are modular such that any subset of backends is supported.

r-calibrate 1.7.2 — Calibration of scatterplot and biplot axes

This is a package for drawing calibrated scales with tick marks on (non-orthogonal) variable vectors in scatterplots and biplots.

r-callr 3.1.1 — Call R from R

It is sometimes useful to perform a computation in a separate R process, without affecting the current R process at all. This packages does exactly that.

r-capushe 1.1.1 — Calibrating penalities using slope heuristics

This package provides tools for the calibration of penalized criteria for model selection. The calibration methods available are based on the slope heuristics.

r-car 3.0-2 — Companion to applied regression

This package provides functions and datasets from book Companion to Applied regression, Second Edition, Sage, 2011.

r-cardata 3.0-2 — Data Sets for the book Companion to Applied Regression

This package provides datasets to accompany J. Fox and S. Weisberg, An R Companion to Applied Regression, Third Edition, Sage.

r-caret 6.0-81 — Classification and regression training

This package provides misc functions for training and plotting classification and regression models.

r-catdap 1.3.4 — Tools for categorical data analysis

This package provides functions for analyzing multivariate data. Dependencies of the distribution of the specified variable (response variable) to other variables (explanatory variables) are derived and evaluated by the Akaike Information Criterion (AIC).

r-category 2.48.0 — Category analysis

This package provides a collection of tools for performing category analysis.

r-catools 1.17.1.2 — Various tools including functions for moving window statistics

This package contains several basic utility functions including: moving (rolling, running) window statistic functions, read/write for GIF and ENVI binary files, fast calculation of AUC, LogitBoost classifier, base64 encoder/decoder, round-off-error-free sum and cumsum, etc.

r-catterplots 0-2.40063ec57 — Scatter plots with cat shaped points

Did you ever wish you could make scatter plots with cat shaped points? Now you can!

r-cellranger 1.1.0 — Translate spreadsheet cell ranges to rows and columns

This package provides helper functions to work with spreadsheets and the A1:D10 style of cell range specification.

r-centipede 1.2 — Predict transcription factor binding sites

CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions of the genome that are bound by particular transcription factors. It starts by identifying a set of candidate binding sites, and then aims to classify the sites according to whether each site is bound or not bound by a transcription factor. CENTIPEDE is an unsupervised learning algorithm that discriminates between two different types of motif instances using as much relevant information as possible.

r-cgdsr 1.2.10 — R-based API for accessing the MSKCC Cancer Genomics Data Server

This package provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

r-cghbase 1.42.0 — Base functions and classes for arrayCGH data analysis

This package contains functions and classes that are needed by the arrayCGH packages.

r-cghcall 2.44.0 — Base functions and classes for arrayCGH data analysis

This package contains functions and classes that are needed by arrayCGH packages.

r-checkmate 1.9.1 — Fast and versatile argument checks

This package provides tests and assertions to perform frequent argument checks. A substantial part of the package was written in C to minimize any worries about execution time overhead.

r-chemometricswithr 0.1.13 — Chemometrics with R

This package provides functions and scripts used in the book "Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences" by Ron Wehrens, Springer (2011).

r-chipcomp 1.12.0 — Quantitative comparison of multiple ChIP-seq datasets

ChIPComp implements a statistical method for quantitative comparison of multiple ChIP-seq datasets. It detects differentially bound sharp binding sites across multiple conditions considering matching control in ChIP-seq datasets.

r-chipexoqual 1.6.0 — Quality control pipeline for ChIP-exo/nexus data

This package provides a quality control pipeline for ChIP-exo/nexus sequencing data.

r-chipkernels 1.1-1.c9cfcacb6 — Build string kernels for DNA Sequence analysis

ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences.

r-chippeakanno 3.16.1 — Peaks annotation from ChIP-seq and ChIP-chip experiments

The package includes functions to retrieve the sequences around the peak, obtain enriched Gene Ontology (GO) terms, find the nearest gene, exon, miRNA or custom features such as most conserved elements and other transcription factor binding sites supplied by users. Starting 2.0.5, new functions have been added for finding the peaks with bi-directional promoters with summary statistics (peaksNearBDP), for summarizing the occurrence of motifs in peaks (summarizePatternInPeaks) and for adding other IDs to annotated peaks or enrichedGO (addGeneIDs).

r-chipseq 1.32.0 — Package for analyzing ChIPseq data

This package provides tools for processing short read data from ChIPseq experiments.

r-chron 2.3-53 — Chronological R objects which can handle dates and times

This package provides chronological R objects which can handle dates and times.

r-circlize 0.4.5 — Circular visualization

Circular layout is an efficient way to visualise huge amounts of information. This package provides an implementation of circular layout generation in R as well as an enhancement of available software. Its flexibility is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, it gives users more convenience and freedom to design figures for better understanding complex patterns behind multi-dimensional data.

r-circular 0.4-93 — Circular statistics

This package provides tools for circular statistics, from "Topics in circular Statistics" (2001) S. Rao Jammalamadaka and A. SenGupta, World Scientific.

r-circus 0.1.5 — Annotation, analysis and visualization of circRNA data

Circus is an R package for annotation, analysis and visualization of circRNA data. Users can annotate their circRNA candidates with host genes, gene featrues they are spliced from, and discriminate between known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs can be calculated, and a number of descriptive plots easily generated.

r-class 7.3-15 — R functions for classification

This package provides various functions for classification, including k-nearest neighbour, Learning Vector Quantization and Self-Organizing Maps.

r-cli 1.0.1 — Helpers for developing command line interfaces

This package provides a suite of tools designed to build attractive command line interfaces (CLIs). It includes tools for drawing rules, boxes, trees, and Unicode symbols with ASCII alternatives.

r-clipr 0.5.0 — Read and write from the system clipboard

This package provides simple utility functions to read from and write to the system clipboards.

r-clisymbols 1.2.0 — Unicode symbols at the R prompt

This package provides a small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode.

r-cluster 2.0.7-1 — Methods for cluster analysis

This package provides methods for cluster analysis. It is a much extended version of the original from Peter Rousseeuw, Anja Struyf and Mia Hubert, based on Kaufman and Rousseeuw (1990) "Finding Groups in Data".

r-clusteval 0.1 — Evaluation of clustering algorithms

This R package provides a suite of tools to evaluate clustering algorithms, clusterings, and individual clusters.

r-cmprsk 2.2-7 — Subdistribution analysis of competing risks

This package provides tool for estimation, testing and regression modeling of subdistribution functions in competing risks, as described in Gray (1988), A class of K-sample tests for comparing the cumulative incidence of a competing risk, Ann. Stat. 16:1141-1154, and Fine JP and Gray RJ (1999), A proportional hazards model for the subdistribution of a competing risk, JASA, 94:496-509.

r-cobs 1.3-3 — Constrained B-Splines (sparse matrix based)

This package provides qualitatively constrained (regression) smoothing splines via linear programming and sparse matrices.

r-coda 0.19-2 — This is a package for Output Analysis and Diagnostics for MCMC

This package provides functions for summarizing and plotting the output from Markov Chain Monte Carlo (MCMC) simulations, as well as diagnostic tests of convergence to the equilibrium distribution of the Markov chain.

r-codedepends 0.6.5 — Analysis of R code for reproducible research and code comprehension

This package provides tools for analyzing R expressions or blocks of code and determining the dependencies between them. It focuses on R scripts, but can be used on the bodies of functions. There are many facilities including the ability to summarize or get a high-level view of code, determining dependencies between variables, code improvement suggestions.

r-codetools 0.2-16 — Code analysis tools for R

This package provides code analysis tools for R to check R code for possible problems.

r-coin 1.2-2 — Conditional inference procedures in a permutation test framework

This package provides conditional inference procedures for the general independence problem including two-sample, K-sample (non-parametric ANOVA), correlation, censored, ordered and multivariate problems.

r-colorout 1.2-0 — Colorize output in the R REPL

colorout is an R package that colorizes R output when running in terminal emulator.

R STDOUT is parsed and numbers, negative numbers, dates in the standard format, strings, and R constants are identified and wrapped by special ANSI scape codes that are interpreted by terminal emulators as commands to colorize the output. R STDERR is also parsed to identify the expressions warning and error and their translations to many languages. If these expressions are found, the output is colorized accordingly; otherwise, it is colorized as STDERROR (blue, by default).

You can customize the colors according to your taste, guided by the color table made by the command show256Colors(). You can also set the colors to any arbitrary string. In this case, it is up to you to set valid values.

r-colorramps 2.3 — Build color tables

This package provides features to build gradient color maps.

r-colorspace 1.4-0 — Color space manipulation

This package carries out a mapping between assorted color spaces including RGB, HSV, HLS, CIEXYZ, CIELUV, HCL (polar CIELUV), CIELAB and polar CIELAB. Qualitative, sequential, and diverging color palettes based on HCL colors are provided.

r-colourpicker 1.0 — Color picker tool for Shiny and for selecting colors in plots

This package provides a color picker that can be used as an input in Shiny apps or Rmarkdown documents. The color picker supports alpha opacity, custom color palettes, and many more options. A plot color helper tool is available as an RStudio Addin, which helps you pick colors to use in your plots. A more generic color picker RStudio Addin is also provided to let you select colors to use in your R code.

r-combinat 0.0-8 — Combinatorics utilities

This package provides assorted routines for combinatorics.

r-commonmark 1.7 — CommonMark and Github Markdown Rendering in R

The CommonMark specification defines a rationalized version of markdown syntax. This package uses the 'cmark' reference implementation for converting markdown text into various formats including HTML, LaTeX and groff man. In addition, it exposes the markdown parse tree in XML format. The latest version of this package also adds support for Github extensions including tables, autolinks and strikethrough text.

r-compare 0.2-6 — Comparing objects for differences

This package provides functions to compare a model object to a comparison object. If the objects are not identical, the functions can be instructed to explore various modifications of the objects (e.g., sorting rows, dropping names) to see if the modified versions are identical.

r-complexheatmap 1.20.0 — Making Complex Heatmaps

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. This package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.

r-complexplus 2.1 — Functions of complex or real variables

This package extends several functions to the complex domain, including the matrix exponential and logarithm, and the determinant.

r-compositions 1.40-2 — Compositional data analysis

This package provides functions for the consistent analysis of compositional data (e.g. portions of substances) and positive numbers (e.g. concentrations).

r-compquadform 1.4.3 — Distribution function of quadratic forms in normal variables

This package provides functions to compute the distribution function of quadratic forms in normal variables using Imhof's method, Davies's algorithm, Farebrother's algorithm or Liu et al.'s algorithm.

r-copyhelper 1.6.0 — Helper files for CopywriteR

This package contains the helper files that are required to run the Bioconductor package CopywriteR. It contains pre-assembled 1kb bin GC-content and mappability files for the reference genomes hg18, hg19, hg38, mm9 and mm10. In addition, it contains a blacklist filter to remove regions that display copy number variation. Files are stored as GRanges objects from the GenomicRanges Bioconductor package.

r-copynumber 1.22.0 — Segmentation of single- and multi-track copy number data

This package segments single- and multi-track copy number data by a penalized least squares regression method.

r-copywriter 2.14.1 — Copy number information from targeted sequencing

CopywriteR extracts DNA copy number information from targeted sequencing by utilizing off-target reads. It allows for extracting uniformly distributed copy number information, can be used without reference, and can be applied to sequencing data obtained from various techniques including chromatin immunoprecipitation and target enrichment on small gene panels. Thereby, CopywriteR constitutes a widely applicable alternative to available copy number detection tools.

r-corpcor 1.6.9 — Efficient estimation of covariance and (partial) correlation

This package implements a James-Stein-type shrinkage estimator for the covariance matrix, with separate shrinkage for variances and correlations. Furthermore, functions are available for fast singular value decomposition, for computing the pseudoinverse, and for checking the rank and positive definiteness of a matrix.

r-corrplot 0.84 — Visualization of a correlation matrix

This package provides a graphical display of a correlation matrix or general matrix. It also contains some algorithms to do matrix reordering. In addition, corrplot is good at details, including choosing color, text labels, color labels, layout, etc.

r-cowplot 0.9.4 — Streamlined plot theme and plot annotations for ggplot2

This package provides some helpful extensions and modifications to the ggplot2 package to combine multiple ggplot2 plots into one and label them with letters, as is often required for scientific publications.

r-crayon 1.3.4 — Colored terminal output for R

Colored terminal output on terminals that support ANSI color and highlight codes. It also works in Emacs ESS. ANSI color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the "chalk" JavaScript project.

r-crosstalk 1.0.0 — Inter-widget interactivity for HTML widgets

This package provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). It currently supports linked brushing and filtering.

r-cssam 1.4-1.9ec58c9 — Cell type-specific statistical analysis of microarray

This package implements the method csSAM that computes cell-specific differential expression from measured cell proportions using SAM.

r-ctc 1.56.0 — Cluster and tree conversion

This package provides tools for exporting and importing classification trees and clusters to other programs.

r-cubature 2.0.3 — Adaptive multivariate integration over hypercubes

This package is an R wrapper around the cubature C library for adaptive multivariate integration over hypercubes. This version provides both hcubature and pcubature routines in addition to a vector interface.

r-curl 3.3 — HTTP client for R

The curl() and curl_download() functions provide highly configurable drop-in replacements for base url() and download.file() with better performance, support for encryption, gzip compression, authentication, and other libcurl goodies. The core of the package implements a framework for performing fully customized requests where data can be processed either in memory, on disk, or streaming via the callback or connection interfaces.

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