Packages — R (Page 5 of 7)

r-survival 2.41-3 — Survival analysis

This package contains the core survival analysis routines, including definition of Surv objects, Kaplan-Meier and Aalen-Johansen (multi-state) curves, Cox models, and parametric accelerated failure time models.

r-sushi 1.16.0 — Tools for visualizing genomics data

This package provides flexible, quantitative, and integrative genomic visualizations for publication-quality multi-panel figures.

r-sva 3.26.0 — Surrogate variable analysis

This package contains functions for removing batch effects and other unwanted variation in high-throughput experiment. It also contains functions for identifying and building surrogate variables for high-dimensional data sets. Surrogate variables are covariates constructed directly from high-dimensional data like gene expression/RNA sequencing/methylation/brain imaging data that can be used in subsequent analyses to adjust for unknown, unmodeled, or latent sources of noise.

r-svglite 1.2.1 — SVG graphics device

svglite is a graphics device that produces clean SVG (Scalable Vector Graphics) output, suitable for use on the web, or hand editing. Compared to the built-in svg(), svglite is considerably faster, produces smaller files, and leaves text as is.

r-synchronicity — Boost mutex functionality in R

This package provides support for synchronization via mutexes and may eventually support interprocess communication and message passing.

r-systempiper 1.12.0 — Next generation sequencing workflow and reporting environment

This R package provides tools for building and running automated end-to-end analysis workflows for a wide range of next generation sequence (NGS) applications such as RNA-Seq, ChIP-Seq, VAR-Seq and Ribo-Seq. Important features include a uniform workflow interface across different NGS applications, automated report generation, and support for running both R and command-line software, such as NGS aligners or peak/variant callers, on local computers or compute clusters. Efficient handling of complex sample sets and experimental designs is facilitated by a consistently implemented sample annotation infrastructure.

r-tclust 1.3-1 — Robust trimmed clustering

This package implements different robust clustering algorithms (tclust) based on trimming and including some graphical diagnostic tools (ctlcurves and DiscrFact).

r-testthat 2.0.0 — Unit testing for R

This package provides a unit testing system for R designed to be fun, flexible and easy to set up.

r-tgconfig — Infrastructure for managing package parameters

The goal of tgconfig is to provide infrastructure for managing package parameters.

r-tgstat 1.0.2-1.4f8e60c — Tanay's group statistical utilities

The goal of tgstat is to provide fast and efficient statistical tools.

r-tibble 1.3.4 — Simple data frames

This package provides a tbl_df class that offers better checking and printing capabilities than traditional data frames.

r-tidyr 0.7.2 — Tidy data with `spread()` and `gather()` functions

tidyr is a reframing of the reshape2 package designed to accompany the tidy data framework, and to work hand-in-hand with magrittr and dplyr to build a solid pipeline for data analysis. It is designed specifically for tidying data, not the general reshaping that reshape2 does, or the general aggregation that reshape did. In particular, built-in methods only work for data frames, and tidyr provides no margins or aggregation.

r-tidyselect 0.2.3 — Select from a set of strings

This package provides a backend for the selecting functions of the tidyverse. It makes it easy to implement select-like functions in your own packages in a way that is consistent with other tidyverse interfaces for selection.

r-timedate 3042.101 — Chronological and calendar objects

This package provides an environment for teaching "Financial Engineering and Computational Finance" and for managing chronological and calendar objects.

r-topgo 2.30.0 — Enrichment analysis for gene ontology

The topGO package provides tools for testing gene ontology (GO) terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

r-trimcluster 0.1-2 — Cluster analysis with trimming

The trimmed k-means clustering method by Cuesta-Albertos, Gordaliza and Matran (1997). This optimizes the k-means criterion under trimming a portion of the points.

r-truncnorm 1.0-7 — Truncated normal distribution

This package provides functions for the truncated normal distribution with mean equal to mean and standard deviation equal to sd. It includes density, distribution, quantile, and expected value functions, as well as a random generation function.

r-tsne 0.1-3 — t-Distributed Stochastic Neighbor Embedding for R

This package provides a pure R implementation of the t-SNE algorithm.

r-txdb-hsapiens-ucsc-hg19-knowngene 3.2.2 — Annotation package for human genome in TxDb format

This package provides an annotation database of Homo sapiens genome data. It is derived from the UCSC hg19 genome and based on the "knownGene" track. The database is exposed as a TxDb object.

r-txdb-mmusculus-ucsc-mm10-knowngene 3.4.0 — Annotation package for TxDb knownGene object(s) for Mouse

This package loads a TxDb object, which is an R interface to prefabricated databases contained in this package. This package provides the TxDb object of Mouse data as provided by UCSC (mm10, December 2011) based on the knownGene track.

r-tximport 1.6.0 — Import and summarize transcript-level estimates for gene-level analysis

This package provides tools to import transcript-level abundance, estimated counts and transcript lengths, and to summarize them into matrices for use with downstream gene-level analysis packages. Average transcript length, weighted by sample-specific transcript abundance estimates, is provided as a matrix which can be used as an offset for different expression of gene-level counts.

r-variantannotation 1.24.2 — Package for annotation of genetic variants

This R package can annotate variants, compute amino acid coding changes and predict coding outcomes.

r-vcd 1.4-4 — Visualizing categorical data

This package provides visualization techniques, data sets, summary and inference procedures aimed particularly at categorical data. Special emphasis is given to highly extensible grid graphics. The package was originally inspired by the book "Visualizing Categorical Data" by Michael Friendly and is now the main support package for a new book, "Discrete Data Analysis with R" by Michael Friendly and David Meyer (2015).

r-vegan 2.4-5 — Functions for community ecology

The vegan package provides tools for descriptive community ecology. It has most basic functions of diversity analysis, community ordination and dissimilarity analysis. Most of its multivariate tools can be used for other data types as well.

r-vgam 1.0-4 — Vector generalized linear and additive models

This package is an implementation of about 6 major classes of statistical regression models. Currently only fixed-effects models are implemented, i.e., no random-effects models. Many (150+) models and distributions are estimated by maximum likelihood estimation (MLE) or penalized MLE, using Fisher scoring. VGLMs can be loosely thought of as multivariate generalised linear models.

r-vioplot 0.2 — Violin plot

This package provides a violin plot, which is a combination of a box plot and a kernel density plot.

r-vipor 0.4.5 — Plot categorical data using noise and density estimates

This package provides tools to generate a violin point plot, a combination of a violin/histogram plot and a scatter plot by offsetting points within a category based on their density using quasirandom noise.

r-viridis 0.4.0 — Matplotlib default color map

This package is a port of the new color maps (viridis--the default--, magma, plasma, and inferno) to R. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness.

r-viridislite 0.2.0 — Default color maps from matplotlib

This package is a port of the new matplotlib color maps ('viridis', 'magma', 'plasma' and 'inferno') to R. matplotlib is a popular plotting library for Python. These color maps are designed in such a way that they will analytically be perfectly perceptually-uniform, both in regular form and also when converted to black-and-white. They are also designed to be perceived by readers with the most common form of color blindness. This is the 'lite' version of the more complete viridis package.

r-vsn 3.46.0 — Variance stabilization and calibration for microarray data

The package implements a method for normalising microarray intensities, and works for single- and multiple-color arrays. It can also be used for data from other technologies, as long as they have similar format. The method uses a robust variant of the maximum-likelihood estimator for an additive-multiplicative error model and affine calibration. The model incorporates data calibration step (a.k.a. normalization), a model for the dependence of the variance on the mean intensity and a variance stabilizing data transformation. Differences between transformed intensities are analogous to "normalized log-ratios". However, in contrast to the latter, their variance is independent of the mean, and they are usually more sensitive and specific in detecting differential transcription.

r-wgcna 1.61 — Weighted correlation network analysis

This package provides functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data. It includes functions for rudimentary data cleaning, construction and summarization of correlation networks, module identification and functions for relating both variables and modules to sample traits. It also includes a number of utility functions for data manipulation and visualization.

r-whisker 0.3-2 — Logicless mustache templating for R

This package provides logicless templating, with a syntax that is not limited to R.

r-withr 2.1.0 — Run code with temporarily modified global state

This package provides a set of functions to run R code in an environment in which global state has been temporarily modified. Many of these functions were originally a part of the r-devtools package.

r-xml 3.98-1.9 — Tools for parsing and generating XML within R

Many approaches for both reading and creating XML (and HTML) documents (including DTDs), both local and accessible via HTTP or FTP. Also offers access to an XPath "interpreter".

r-xml2 1.1.1 — Parse XML with R

This package provides a simple, consistent interface to working with XML files in R. It is built on top of the libxml2 C library.

r-xnomial 1.0.4 — Goodness-of-Fit test for multinomial data

This package provides an exact Goodness-of-Fit test for multinomial data with fixed probabilities. It can be used to determine whether a set of counts fits a given expected ratio. To see whether a set of observed counts fits an expectation, one can examine all possible outcomes with xmulti() or a random sample of them with xmonte() and find the probability of an observation deviating from the expectation by at least as much as the observed. As a measure of deviation from the expected, one can use the log-likelihood ratio, the multinomial probability, or the classic chi-square statistic. A histogram of the test statistic can also be plotted and compared with the asymptotic curve.

r-xtable 1.8-2 — Export R tables to LaTeX or HTML

This package provides tools to export R data as LaTeX and HTML tables.

r-xts 0.10-0 — Extensible time series

This package provides for uniform handling of R's different time-based data classes by extending zoo, maximizing native format information preservation and allowing for user-level customization and extension, while simplifying cross-class interoperability.

r-xvector 0.18.0 — Representation and manpulation of external sequences

This package provides memory efficient S4 classes for storing sequences "externally" (behind an R external pointer, or on disk).

r-yaml 2.1.16 — Methods to convert R data to YAML and back

This package implements the libyaml YAML 1.1 parser and emitter ( for R.

r-zlibbioc 1.24.0 — Provider for zlib-1.2.5 to R packages

This package uses the source code of zlib-1.2.5 to create libraries for systems that do not have these available via other means.

r-zoo 1.8-0 — S3 infrastructure for regular and irregular time series

This package contains an S3 class with methods for totally ordered indexed observations. It is particularly aimed at irregular time series of numeric vectors/matrices and factors.

r-ztable 0.1.5 — Zebra-striped tables in LaTeX and HTML formats for R

This package provides functions to make zebra-striped tables (tables with alternating row colors) in LaTeX and HTML formats easily from data.frame, matrix, lm, aov, anova, glm, coxph, nls, fitdistr, mytable and cbind.mytable objects.

racket 6.8 — Implementation of Scheme and related languages

Racket is an implementation of the Scheme programming language (R5RS and R6RS) and related languages, such as Typed Racket. It features a compiler and a virtual machine with just-in-time native compilation, as well as a large set of libraries.

radare2 1.6.0 — Portable reversing framework

Radare project started as a forensics tool, a scriptable commandline hexadecimal editor able to open disk files, but later support for analyzing binaries, disassembling code, debugging programs, attaching to remote gdb servers, ...

radeontop 1.0 — Usage monitor for AMD Radeon graphics

RadeonTop monitors resource consumption on supported AMD Radeon Graphics Processing Units (GPUs), either in real time as bar graphs on a terminal or saved to a file for further processing. It measures both the activity of the GPU as a whole, which is also accurate during OpenCL computations, as well as separate component statistics that are only meaningful under OpenGL graphics workloads.

radicale 1.1.2 — Basic CalDAV and CardDAV server

Radicale is a CalDAV and CardDAV server for UNIX-like platforms. Calendars and address books are available for both local and remote access, possibly limited through authentication policies. They can be viewed and edited by calendar and contact clients on mobile phones or computers.

Radicale intentionally does not fully comply with the CalDAV and CardDAV RFCs. Instead, it supports the CalDAV and CardDAV implementations of popular clients.

rage 0.2.1 — Video and audio player based on EFL

Rage is a video and audio player written with Enlightenment Foundation Libraries with some extra bells and whistles.

ragel 6.9 — State machine compiler

Ragel compiles executable finite state machines from regular languages. Ragel targets C, C++, Obj-C, C#, D, Java, Go and Ruby. Ragel state machines can not only recognize byte sequences as regular expression machines do, but can also execute code at arbitrary points in the recognition of a regular language. Code embedding is done using inline operators that do not disrupt the regular language syntax.

raincat — Puzzle game with a cat in lead role

Project Raincat is a game developed by Carnegie Mellon students through GCS during the Fall 2008 semester. Raincat features game play inspired from classics Lemmings and The Incredible Machine. The project proved to be an excellent learning experience for the programmers. Everything is programmed in Haskell.

rakarrack 0.6.1 — Audio effects processor

Rakarrack is a richly featured multi-effects processor emulating a guitar effects pedalboard. Effects include compressor, expander, noise gate, equalizers, exciter, flangers, chorus, various delay and reverb effects, distortion modules and many more. Most of the effects engine is built from modules found in the excellent software synthesizer ZynAddSubFX. Presets and user interface are optimized for guitar, but Rakarrack processes signals in stereo while it does not apply internal band-limiting filtering, and thus is well suited to all musical instruments and vocals.

randomjungle 2.1.0 — Implementation of the Random Forests machine learning method

Random Jungle is an implementation of Random Forests. It is supposed to analyse high dimensional data. In genetics, it can be used for analysing big Genome Wide Association (GWA) data. Random Forests is a powerful machine learning method. Most interesting features are variable selection, missing value imputation, classifier creation, generalization error estimation and sample proximities between pairs of cases.

randrproto 1.5.0 — Xorg RandRProto protocol headers

Resize and Rotate Extension defines a protocol for clients to dynamically change X screens, so as to resize, rotate and reflect the root window of a screen.

rapicorn 16.0.0 — Toolkit for rapid development of user interfaces

Rapicorn is a toolkit for rapid development of user interfaces in C++ and Python. The user interface is designed in a declarative markup language and is connected to the programming logic using data bindings and commands.

rapidjson 1.1.0 — JSON parser/generator for C++ with both SAX/DOM style API

RapidJSON is a fast JSON parser/generator for C++ with both SAX/DOM style API.

raptor2 2.0.15 — RDF syntax library

Raptor is a C library providing a set of parsers and serialisers that generate Resource Description Framework (RDF) triples by parsing syntaxes or serialise the triples into a syntax. The supported parsing syntaxes are RDF/XML, N-Quads, N-Triples 1.0 and 1.1, TRiG, Turtle 2008 and 2013, RDFa 1.0 and 1.1, RSS tag soup including all versions of RSS, Atom 1.0 and 0.3, GRDDL and microformats for HTML, XHTML and XML. The serialising syntaxes are RDF/XML (regular, abbreviated, XMP), Turtle 2013, N-Quads, N-Triples 1.1, Atom 1.0, RSS 1.0, GraphViz DOT, HTML and JSON.

rasqal 0.9.33 — RDF query library

Rasqal is a C library that handles Resource Description Framework (RDF) query language syntaxes, query construction and execution of queries returning results as bindings, boolean, RDF graphs/triples or syntaxes. The supported query languages are SPARQL Query 1.0, SPARQL Query 1.1, SPARQL Update 1.1 (no executing) and the Experimental SPARQL extensions (LAQRS). Rasqal can write binding query results in the SPARQL XML, SPARQL JSON, CSV, TSV, HTML, ASCII tables, RDF/XML and Turtle/N3 and read them in SPARQL XML, RDF/XML and Turtle/N3.

ratpoison 1.4.9 — Simple mouse-free tiling window manager

Ratpoison is a simple window manager with no fat library dependencies, no fancy graphics, no window decorations, and no rodent dependence. It is largely modelled after GNU Screen which has done wonders in the virtual terminal market.

The screen can be split into non-overlapping frames. All windows are kept maximized inside their frames to take full advantage of your precious screen real estate.

All interaction with the window manager is done through keystrokes. Ratpoison has a prefix map to minimize the key clobbering that cripples Emacs and other quality pieces of software.

raul 0.8.0 — Real-time audio utility library

Raul (Real-time Audio Utility Library) is a C++ utility library primarily aimed at audio/musical applications.

raul 0.8.9-1.4db870b2b — Real-time audio utility library

Raul (Real-time Audio Utility Library) is a C++ utility library primarily aimed at audio/musical applications.

raxml 8.2.10 — Randomized Axelerated Maximum Likelihood phylogenetic trees

RAxML is a tool for phylogenetic analysis and post-analysis of large phylogenies.

rc 1.7.4 — Alternative implementation of the rc shell by Byron Rakitzis

This is a reimplementation by Byron Rakitzis of the Plan 9 shell. It has a small feature set similar to a traditional Bourne shell.

rcas-web 0.0.4 — Web interface for RNA-centric annotation system (RCAS)

This package provides a simple web interface for the RNA-centric annotation system (RCAS).

rcs 5.9.4 — Per-file local revision control system

This is a GNU package.

RCS is the original Revision Control System. It works on a file-by-file basis, in contrast to subsequent version control systems such as CVS, Subversion, and Git. This can make it suitable for system administration files, for example, which are often inherently local to one machine.

rdesktop 1.8.3 — Client for Windows Terminal Services

rdesktop is a client for Microsoft's Windows Remote Desktop Services, capable of natively speaking Remote Desktop Protocol (RDP). It allows users to remotely control a user's Windows desktop.

rdiff-backup 1.2.8 — Local/remote mirroring+incremental backup

Rdiff-backup backs up one directory to another, possibly over a network. The target directory ends up a copy of the source directory, but extra reverse diffs are stored in a special subdirectory of that target directory, so you can still recover files lost some time ago. The idea is to combine the best features of a mirror and an incremental backup. Rdiff-backup also preserves subdirectories, hard links, dev files, permissions, uid/gid ownership, modification times, extended attributes, acls, and resource forks. Also, rdiff-backup can operate in a bandwidth efficient manner over a pipe, like rsync. Thus you can use rdiff-backup and ssh to securely back a hard drive up to a remote location, and only the differences will be transmitted. Finally, rdiff-backup is easy to use and settings have sensible defaults.

rdma-core 14 — Utilities and libraries for working with RDMA devices

This package provides userspace components for the InfiniBand subsystem of the Linux kernel. Specifically it contains userspace libraries for the following device nodes:

  1. /dev/infiniband/uverbsX (libibverbs)

  2. /dev/infiniband/rdma_cm (librdmacm)

  3. /dev/infiniband/umadX (libibumad)

The following service daemons are also provided:

  1. srp_daemon (for the ib_srp kernel module)

  2. iwpmd (for iWARP kernel providers)

  3. ibacm (for InfiniBand communication management assistant)

rdmd 2.073.0 — Specialized equivalent to 'make' for the D language

rdmd is a companion to the dmd compiler that simplifies the typical edit-compile-link-run or edit-make-run cycle to a rapid edit-run cycle. Like make and other tools, rdmd uses the relative dates of the files involved to minimize the amount of work necessary. Unlike make, rdmd tracks dependencies and freshness without requiring additional information from the user.

rdup 1.1.14 — Provide a list of files to backup

Rdup is a utility inspired by rsync and the plan9 way of doing backups. Rdup itself does not backup anything, it only print a list of absolute file names to standard output. Auxiliary scripts are needed that act on this list and implement the backup strategy.

re2 2017-12-01 — Fast, safe, thread-friendly regular expression engine

RE2 is a fast, safe, thread-friendly alternative to backtracking regular expression engines like those used in PCRE, Perl and Python. It is a C++ library.

re2c 0.16 — Lexer generator for C/C++

re2c generates minimalistic hard-coded state machine (as opposed to full-featured table-based lexers). Flexible API allows generated code to be wired into virtually any environment. Instead of exposing traditional yylex() style API, re2c exposes its internals. Be sure to take a look at examples, they cover a lot of real-world cases and shed some light on dark corners of re2c API.

readline 7.0 — Edit command lines while typing, with history support

This is a GNU package.

The GNU readline library allows users to edit command lines as they are typed in. It can maintain a searchable history of previously entered commands, letting you easily recall, edit and re-enter past commands. It features both Emacs-like and vi-like keybindings, making its usage comfortable for anyone.

readline 6.2 — Edit command lines while typing, with history support

This is a GNU package.

The GNU readline library allows users to edit command lines as they are typed in. It can maintain a searchable history of previously entered commands, letting you easily recall, edit and re-enter past commands. It features both Emacs-like and vi-like keybindings, making its usage comfortable for anyone.

recode — Text encoding converter

The Recode library converts files between character sets and usages. It recognises or produces over 200 different character sets (or about 300 if combined with an iconv library) and transliterates files between almost any pair. When exact transliteration are not possible, it gets rid of offending characters or falls back on approximations. The recode program is a handy front-end to the library.

recordmydesktop — Desktop session video recorder

recordMyDesktop is a command-line tool that captures the activity in your graphical desktop and encodes it as a video. This is a useful tool for making screencasts.

recordproto 1.14.2 — Xorg RecordProto protocol headers

Record Extension defines a protocol for the recording and playback of user actions in the X Window System.

recutils 1.7 — Manipulate plain text files as databases

This is a GNU package.

GNU Recutils is a set of tools and libraries for creating and manipulating text-based, human-editable databases. Despite being text-based, databases created with Recutils carry all of the expected features such as unique fields, primary keys, time stamps and more. Many different field types are supported, as is encryption.

red-eclipse 1.5.8-2 — Arena shooter derived from the Cube 2 engine

Red Eclipse is an arena shooter, created from the Cube2 engine. Offering an innovative parkour system and distinct but all potent weapons, Red Eclipse provides fast paced and accessible gameplay.

redis 4.0.2 — Key-value cache and store

Redis is an advanced key-value cache and store. Redis supports many data structures including strings, hashes, lists, sets, sorted sets, bitmaps and hyperloglogs.

redland 1.0.17 — RDF library

The Redland RDF Library (librdf) provides the RDF API and triple stores.

redshift 1.11 — Adjust the color temperature of your screen

Redshift adjusts the color temperature according to the position of the sun. A different color temperature is set during night and daytime. During twilight and early morning, the color temperature transitions smoothly from night to daytime temperature to allow your eyes to slowly adapt. At night the color temperature should be set to match the lamps in your room.

reducelcs 1.0-1.474f88d — Approximate Longest Commons Subsequence computation tool

reduceLCS is an implementation of the Reduce-Expand algorithm for LCS. It is a fast program to compute the approximate Longest Commons Subsequence of a set of strings.

remind 3.1.15 — Sophisticated calendar and alarm program

Remind allows you to remind yourself of upcoming events and appointments. Each reminder or alarm can consist of a message sent to standard output, or a program to be executed. It also features: sophisticated date calculation, moon phases, sunrise/sunset, Hebrew calendar, alarms, PostScript output and proper handling of holidays.

renderproto 0.11.1 — Xorg RenderProto protocol headers

Rendering Extension defines a protcol for a digital image composition as the foundation of a new rendering model within the X Window System.

rep-gtk — GTK+ binding for librep

Rep-GTK is a GTK+ (and GLib, GDK) binding to the librep, and one of the backend of Sawfish.

reposurgeon 3.37 — Edit version-control repository history

Reposurgeon enables risky operations that version-control systems don't want to let you do, such as editing past comments and metadata and removing commits. It works with any version control system that can export and import Git fast-import streams, including Git, Mercurial, Fossil, Bazaar, CVS, RCS, and Src. It can also read Subversion dump files directly and can thus be used to script production of very high-quality conversions from Subversion to any supported Distributed Version Control System (DVCS).

reptyr 0.6.2 — Tool for reparenting a running program to a new terminal

reptyr is a utility for taking an existing running program and attaching it to a new terminal. Started a long-running process over ssh, but have to leave and don't want to interrupt it? Just start a screen, use reptyr to grab it, and then kill the ssh session and head on home.

resourceproto 1.2.0 — Xorg ResourceProto protocol headers

Resource Extension defines a protocol that allows a client to query the X server about its usage of various resources.

rest 0.8.1 — RESTful web api query library

This is a GNU package.

This library was designed to make it easier to access web services that claim to be "RESTful". It includes convenience wrappers for libsoup and libxml to ease remote use of the RESTful API.

retroarch 1.6.9 — Reference frontend for the libretro API

Libretro is a simple but powerful development interface that allows for the easy creation of emulators, games and multimedia applications that can plug straight into any libretro-compatible frontend. RetroArch is the official reference frontend for the libretro API, currently used by most as a modular multi-system game/emulator system.

retux 1.3.5 — Action platformer game

ReTux is an action platformer loosely inspired by the Mario games, utilizing the art assets from the SuperTux project.

rev-plugins 0.7.1 — LADSPA reverb plugin

This package provides a stereo reverb LADSPA plugin based on the well-known greverb.

rfkill 0.5 — Tool for enabling and disabling wireless devices

rfkill is a simple tool for accessing the rfkill device interface, which is used to enable and disable wireless networking devices, typically WLAN, Bluetooth and mobile broadband.

rhythmbox 3.4.2 — Music player for GNOME

This is a GNU package.

Rhythmbox is a music playing application for GNOME. It supports playlists, song ratings, and any codecs installed through gstreamer.

ribodiff 0.2.2 — Detect translation efficiency changes from ribosome footprints

RiboDiff is a statistical tool that detects the protein translational efficiency change from Ribo-Seq (ribosome footprinting) and RNA-Seq data. It uses a generalized linear model to detect genes showing difference in translational profile taking mRNA abundance into account. It facilitates us to decipher the translational regulation that behave independently with transcriptional regulation.

ribotaper 1.3.1 — Define translated ORFs using ribosome profiling data

Ribotaper is a method for defining translated open reading frames (ORFs) using ribosome profiling (ribo-seq) data. This package provides the Ribotaper pipeline.

ripit 3.9.0 — Command-line program to extract audio CDs

RipIT is used to extract audio from CDs.

ripperx 2.8.0 — GTK program to rip and encode CD audio tracks

RipperX is a GTK program to rip CD audio tracks and encode them to the Ogg, MP3, or FLAC formats. Its goal is to be easy to use, requiring only a few mouse clicks to convert an entire album. It supports CDDB lookups for album and track information.

ristretto 0.8.0 — Fast and lightweight picture-viewer

The Ristretto Image Viewer is an application that can be used to view, and scroll through images. It can be used to run a slideshow of images, open images with other applications like an image-editor or configure an image as the desktop wallpaper.

ritornello 1.0.0 — Control-free peak caller for ChIP-seq data

Ritornello is a ChIP-seq peak calling algorithm based on signal processing that can accurately call binding events without the need to do a pair total DNA input or IgG control sample. It has been tested for use with narrow binding events such as transcription factor ChIP-seq.