Packages — R (Page 7 of 9)

rlwrap 0.43 — Wrapper to allow the editing of keyboard commands

Rlwrap is a 'readline wrapper', a small utility that uses the GNU readline library to allow the editing of keyboard input for any command. You should consider rlwrap especially when you need user-defined completion (by way of completion word lists) and persistent history, or if you want to program 'special effects' using the filter mechanism.

rmath-standalone 3.4.3 — Standalone R math library

This package provides the R math library as an independent package.

rng-tools 6.1 — Random number generator daemon

Monitor a hardware random number generator, and supply entropy from that to the system kernel's /dev/random machinery.

roary 3.11.0 — High speed stand-alone pan genome pipeline

Roary is a high speed stand alone pan genome pipeline, which takes annotated assemblies in GFF3 format (produced by the Prokka program) and calculates the pan genome. Using a standard desktop PC, it can analyse datasets with thousands of samples, without compromising the quality of the results. 128 samples can be analysed in under 1 hour using 1 GB of RAM and a single processor. Roary is not intended for metagenomics or for comparing extremely diverse sets of genomes.

rocksdb 5.10.4 — Persistent key-value store for fast storage

RocksDB is a library that forms the core building block for a fast key-value server, especially suited for storing data on flash drives. It has a Log-Structured-Merge-Database (LSM) design with flexible tradeoffs between Write-Amplification-Factor (WAF), Read-Amplification-Factor (RAF) and Space-Amplification-Factor (SAF). It has multi-threaded compactions, making it specially suitable for storing multiple terabytes of data in a single database. RocksDB is partially based on LevelDB.

roffit 0.11-1.e5228388e — Convert nroff files to HTML

Roffit is a program that reads an nroff file and outputs an HTML file. It is typically used to display man pages on a web site.

rofi 1.5.1 — Application launcher

Rofi is a minimalist application launcher. It memorizes which applications you regularly use and also allows you to search for an application by name.

roguebox-adventures 2.1.2-1.19a2c34 — A classical roguelike/sandbox game

RogueBox Adventures is a graphical roguelike with strong influences from sandbox games like Minecraft or Terraria. The main idea of RogueBox Adventures is to offer the player a kind of roguelike toy-world. This world can be explored and changed freely.

rosegarden 17.04 — Music composition and editing environment based around a MIDI sequencer

Rosegarden is a music composition and editing environment based around a MIDI sequencer that features a rich understanding of music notation and includes basic support for digital audio.

rottlog 0.72.2 — Log rotation and management

This is a GNU package.

GNU Rot[t]log is a program for managing log files. It is used to automatically rotate out log files when they have reached a given size or according to a given schedule. It can also be used to automatically compress and archive such logs. Rot[t]log will mail reports of its activity to the system administrator.

rpcbind 0.2.4 — Server to convert RPC program numbers into universal addresses

Rpcbind is a server that converts RPC program numbers into universal addresses.

rpm — The RPM Package Manager

The RPM Package Manager (RPM) is a command-line driven package management system capable of installing, uninstalling, verifying, querying, and updating computer software packages. Each software package consists of an archive of files along with information about the package like its version, a description. There is also a library permitting developers to manage such transactions from C or Python.

rrdtool 1.7.0 — Time-series data storage and display system

The Round Robin Database Tool (RRDtool) is a system to store and display time-series data (e.g. network bandwidth, machine-room temperature, server load average). It stores the data in Round Robin Databases (RRDs), a very compact way that will not expand over time. RRDtool processes the extracted data to enforce a certain data density, allowing for useful graphical representation of data values.

rsem 1.2.20 — Estimate gene expression levels from RNA-Seq data

RSEM is a software package for estimating gene and isoform expression levels from RNA-Seq data. The RSEM package provides a user-friendly interface, supports threads for parallel computation of the EM algorithm, single-end and paired-end read data, quality scores, variable-length reads and RSPD estimation. In addition, it provides posterior mean and 95% credibility interval estimates for expression levels. For visualization, it can generate BAM and Wiggle files in both transcript-coordinate and genomic-coordinate.

rseqc 2.6.1 — RNA-seq quality control package

RSeQC provides a number of modules that can comprehensively evaluate high throughput sequence data, especially RNA-seq data. Some basic modules inspect sequence quality, nucleotide composition bias, PCR bias and GC bias, while RNA-seq specific modules evaluate sequencing saturation, mapped reads distribution, coverage uniformity, strand specificity, etc.

rsnapshot 1.4.2 — Deduplicating snapshot backup utility based on rsync

rsnapshot is a file system snapshot utility based on rsync. rsnapshot makes it easy to make periodic snapshots of local machines, and remote machines over SSH. To reduce the disk space required for each backup, rsnapshot uses hard links to deduplicate identical files.

rsound 1.1 — Networked audio system

RSound allows you to send audio from an application and transfer it directly to a different computer on your LAN network. It is an audio daemon with a much different focus than most other audio daemons.

rss-bridge 2018-03-11 — Generate Atom feeds for social networking websites

rss-bridge generates Atom feeds for social networking websites lacking feeds. Supported websites include Facebook, Twitter, Instagram and YouTube.

rsync 3.1.3 — Remote (and local) file copying tool

Rsync is a fast and versatile file copying tool. It can copy locally, to/from another host over any remote shell, or to/from a remote rsync daemon. Its delta-transfer algorithm reduces the amount of data sent over the network by sending only the differences between the source files and the existing files in the destination.

rtags 2.18 — Indexer for the C language family with Emacs integration

RTags is a client/server application that indexes C/C++ code and keeps a persistent file-based database of references, declarations, definitions, symbolnames etc. There’s also limited support for ObjC/ObjC++. It allows you to find symbols by name (including nested class and namespace scope). Most importantly we give you proper follow-symbol and find-references support.

rtl-sdr 0.5.3 — Software defined radio driver for Realtek RTL2832U

DVB-T dongles based on the Realtek RTL2832U can be used as a cheap software defined radio, since the chip allows transferring the raw I/Q samples to the host. rtl-sdr provides drivers for this purpose.

rtmidi 2.1.0 — Cross-platform MIDI library for C++

RtMidi is a set of C++ classes (RtMidiIn, RtMidiOut, and API specific classes) that provide a common cross-platform API for realtime MIDI input/output.

rtorrent 0.9.6 — BitTorrent client with ncurses interface

rTorrent is a BitTorrent client with an ncurses interface. It supports full encryption, DHT, PEX, and Magnet Links. It can also be controlled via XML-RPC over SCGI.

rubber 1.1 — Wrapper for LaTeX and friends

Rubber is a program whose purpose is to handle all tasks related to the compilation of LaTeX documents. This includes compiling the document itself, of course, enough times so that all references are defined, and running BibTeX to manage bibliographic references. Automatic execution of dvips to produce PostScript documents is also included, as well as usage of pdfLaTeX to produce PDF documents.

rubberband 1.8.1 — Audio time-stretching and pitch-shifting library

Rubber Band is a library and utility program that permits changing the tempo and pitch of an audio recording independently of one another.

ruby 2.4.3 — Programming language interpreter

Ruby is a dynamic object-oriented programming language with a focus on simplicity and productivity.

ruby 1.8.7-p374 — Programming language interpreter

Ruby is a dynamic object-oriented programming language with a focus on simplicity and productivity.

ruby 2.1.10 — Programming language interpreter

Ruby is a dynamic object-oriented programming language with a focus on simplicity and productivity.

ruby 2.2.10 — Programming language interpreter

Ruby is a dynamic object-oriented programming language with a focus on simplicity and productivity.

ruby 2.3.7 — Programming language interpreter

Ruby is a dynamic object-oriented programming language with a focus on simplicity and productivity.

ruby-activesupport 5.1.4 — Ruby on Rails utility library

ActiveSupport is a toolkit of support libraries and Ruby core extensions extracted from the Rails framework. It includes support for multibyte strings, internationalization, time zones, and testing.

ruby-ae 1.8.2 — Assertions library

Assertive Expressive (AE) is an assertions library specifically designed for reuse by other test frameworks.

ruby-afm 0.2.2 — Read Adobe Font Metrics (afm) files

This library provides methods to read Adobe Font Metrics (afm) files and use the data therein.

ruby-ansi 1.5.0 — ANSI escape code related libraries

This package is a collection of ANSI escape code related libraries enabling ANSI colorization and stylization of console output. Included in the library are the Code module, which defines ANSI codes as constants and methods, a Mixin module for including color methods, a Logger, a ProgressBar, and a String subclass. The library also includes a Terminal module which provides information about the current output device.

ruby-arel 8.0.0 — SQL AST manager for Ruby

Arel is an SQL Abstract Syntax Tree (AST) manager for Ruby. It simplifies the generation of complex SQL queries and adapts to various relational database implementations.

ruby-ascii85 1.0.2 — Encode and decode Ascii85 binary-to-text encoding

This library provides methods to encode and decode Ascii85 binary-to-text encoding. The main modern use of Ascii85 is in PostScript and Portable Document Format (PDF) file formats.

ruby-asciidoctor — Converter from AsciiDoc content to other formats

Asciidoctor is a text processor and publishing toolchain for converting AsciiDoc content to HTML5, DocBook 5 (or 4.5) and other formats.

ruby-asciimath 1.0.4 — AsciiMath parsing and conversion library

A pure Ruby AsciiMath parsing and conversion library. AsciiMath is an easy-to-write markup language for mathematics.

ruby-atoulme-antwrap 0.7.5 — Ruby wrapper for the Ant build tool

Antwrap is a Ruby module that wraps the Apache Ant build tool. Antwrap can be used to invoke Ant tasks from a Ruby or a JRuby script.

ruby-atoulme-saikuro 1.2.1 — Cyclomatic complexity analyzer

Saikuro is a Ruby cyclomatic complexity analyzer. When given Ruby source code Saikuro will generate a report listing the cyclomatic complexity of each method found. In addition, Saikuro counts the number of lines per method and can generate a listing of the number of tokens on each line of code.

ruby-bacon 1.2.0 — Small RSpec clone

Bacon is a small RSpec clone providing all essential features.

ruby-bacon-bits 0.1.0 — Extensions to Bacon, for disabling tests, before and after blocks and more

This extends the bacon testing framework with useful extensions to disable tests, have before and after blocks that run once and more.

ruby-bio-commandeer 0.4.0 — Simplified running of shell commands from within Ruby

Bio-commandeer provides an opinionated method of running shell commands from within Ruby. The advantage of bio-commandeer over other methods of running external commands is that when something goes wrong, messages printed to the STDOUT and STDERR streams are reported, giving extra detail to ease debugging.

ruby-bio-kseq 0.0.2 — Ruby bindings for the kseq.h FASTA/Q parser

Bio::Kseq provides ruby bindings to the kseq.h FASTA and FASTQ parsing code. It provides a fast iterator over sequences and their quality scores.

ruby-bio-logger 1.0.1 — Log4r wrapper for Ruby

Bio-logger is a wrapper around Log4r adding extra logging features such as filtering and fine grained logging.

ruby-blankslate 3.1.3 — Abstract base class with no predefined methods

BlankSlate provides an abstract base class with no predefined methods (except for __send__ and __id__). BlankSlate is useful as a base class when writing classes that depend upon method_missing (e.g. dynamic proxies).

ruby-bond 0.5.1 — Bond can provide custom autocompletion for arguments, methods and more

Bond can autocomplete argument(s) to methods, uniquely completing per module, per method and per argument. Bond provides a configuration system and a DSL for creating custom completions and completion rules. Bond can also load completions that ship with gems. Bond is able to offer more than irb's completion since it uses the full line of input when completing as opposed to irb's last-word approach.

ruby-brass 1.2.1 — Basic foundational assertions framework

BRASS (Bare-Metal Ruby Assertion System Standard) is a basic foundational assertions framework for other assertion and test frameworks to make use of.

ruby-builder 3.2.3 — Ruby library to create structured data

Builder provides a number of builder objects that make it easy to create structured data. Currently the following builder objects are supported: XML Markup and XML Events.

ruby-byebug 9.0.6 — Debugger for Ruby 2

Byebug is a Ruby 2 debugger implemented using the Ruby 2 TracePoint C API for execution control and the Debug Inspector C API for call stack navigation. The core component provides support that front-ends can build on. It provides breakpoint handling and bindings for stack frames among other things and it comes with a command line interface.

ruby-ci-reporter 2.0.0 — Generate XML reports of runs test

CI::Reporter is an add-on to Ruby testing frameworks that allows you to generate XML reports of your test runs. The resulting files can be read by a continuous integration system that understands Ant's JUnit report format.

ruby-clap 1.0.0 — Command line argument parsing for simple applications

Clap provides command line argument parsing features. It covers the simple case of executing code based on the flags or parameters passed.

ruby-code-statistics 0.2.13 — Port of the rails 'rake stats' method

This gem is a port of the rails 'rake stats' method so it can be made more robust and work for non rails projects.

ruby-coderay 1.1.2 — Ruby syntax highlighting library

Coderay is a Ruby library that provides syntax highlighting for select languages.

ruby-concurrent 1.0.5 — Concurrency tools for Ruby

This library provides modern concurrency tools including agents, futures, promises, thread pools, actors, supervisors, and more. It is inspired by Erlang, Clojure, Go, JavaScript, actors and classic concurrency patterns.

ruby-connection-pool 2.2.1 — Generic connection pool for Ruby

Connection_pool provides a generic connection pooling interface for Ruby programs.

ruby-contest 0.1.3 — Write declarative tests using nested contexts

Contest allows writing declarative Test::Unit tests using nested contexts without performance penalties.

ruby-crass 1.0.3 — Pure Ruby CSS parser

Crass is a pure Ruby CSS parser based on the CSS Syntax Level 3 spec.

ruby-creole 0.5.0 — Creole markup language converter

Creole is a lightweight markup language and this library for converting creole to HTML.

ruby-cucumber-core 2.0.0 — Core library for the Cucumber BDD app

Cucumber is a tool for running automated tests written in plain language. Because they're written in plain language, they can be read by anyone on your team. Because they can be read by anyone, you can use them to help improve communication, collaboration and trust on your team.

ruby-cutest 1.2.2 — Run tests in separate processes

Cutest runs tests in separate processes to avoid shared state.

ruby-czmq-ffi-gen 0.13.0 — Low-level Ruby bindings for CZMQ (generated using zproject)

These Ruby bindings are not intended to be directly used, but rather used by higher level bindings like those provided by CZTop.

ruby-cztop 0.12.2 — CZMQ Ruby bindings

CZMQ Ruby bindings, based on the generated low-level FFI bindings of CZMQ. The focus of of CZTop is on being easy to use and providing first class support for security mechanisms.

ruby-daemons 1.2.5 — Daemonize Ruby programs

Daemons provides a way to wrap existing Ruby scripts to be run as a daemon and to be controlled by simple start/stop/restart commands.

ruby-data_uri 0.1.0 — URI class for parsing data URIs

Data URIs allow resources to be embedded inside a URI. The URI::Data class provides support for parsing these URIs using the normal URI.parse method.

ruby-debug-inspector 0.0.3 — Ruby wrapper for the MRI 2.0 debug_inspector API

This package provides a Ruby wrapper for the MRI 2.0 debug_inspector API.

ruby-diff-lcs 1.3 — Compute the difference between two Enumerable sequences

Diff::LCS computes the difference between two Enumerable sequences using the McIlroy-Hunt longest common subsequence (LCS) algorithm. It includes utilities to create a simple HTML diff output format and a standard diff-like tool.

ruby-docile 1.1.5 — Ruby EDSL helper library

Docile is a Ruby library that provides an interface for creating embedded domain specific languages (EDSLs) that manipulate existing Ruby classes.

ruby-domain-name 0.5.20170404 — Domain name manipulation library

domain_name is a Domain name manipulation library. It parses a domain name ready for extracting the registered domain and TLD (Top Level Domain). It can also be used for cookie domain validation based on the Public Suffix List.

ruby-erubis 2.7.0 — Implementation of embedded Ruby (eRuby)

Erubis is a fast implementation of embedded Ruby (eRuby) with several features such as multi-language support, auto escaping, auto trimming spaces around <% %>, a changeable embedded pattern, and Ruby on Rails support.

ruby-eventmachine 1.2.5 — Single-threaded network event framework for Ruby

EventMachine implements a single-threaded engine for arbitrary network communications. EventMachine wraps all interactions with sockets, allowing programs to concentrate on the implementation of network protocols. It can be used to create both network servers and clients.

ruby-ffi 1.9.23 — Ruby foreign function interface library

Ruby-FFI is a Ruby extension for programmatically loading dynamic libraries, binding functions within them, and calling those functions from Ruby code. Moreover, a Ruby-FFI extension works without changes on Ruby and JRuby.

ruby-fivemat 1.3.5 — Each test file given its own line of dots

Fivemat is a MiniTest/RSpec/Cucumber formatter that gives each test file its own line of dots during testing. It aims to provide test output that is neither too verbose nor too minimal.

ruby-formatador 0.2.5 — Ruby library to format text on stdout

Formatador is a Ruby library to format text printed to the standard output stream.

ruby-gem-hadar 1.9.1 — Library for the development of Ruby gems

This library contains some useful functionality to support the development of Ruby gems.

ruby-gettext 3.1.7 — GNU gettext-like program for Ruby

Gettext is a GNU gettext-like program for Ruby. The catalog file (po-file) used is the same as that used by GNU gettext, allowing you to use GNU gettext tools for maintenance.

ruby-gherkin 4.1.3 — Gherkin parser for Ruby

Gherkin is a parser and compiler for the Gherkin language. It is intended be used by all Cucumber implementations to parse '.feature' files.

ruby-git 1.3.0 — Ruby wrappers for Git

Ruby/Git is a Ruby library that can be used to create, read and manipulate Git repositories by wrapping system calls to the git binary.

ruby-guard 2.13.0 — Tool to handle events on file system modifications

Guard is a command line tool to easily handle events on file system modifications. Guard automates various tasks by running custom rules whenever file or directories are modified.

ruby-hashery 2.1.2 — Hash-like classes with extra features

The Hashery is a tight collection of Hash-like classes. Included are the auto-sorting Dictionary class, the efficient LRUHash, the flexible OpenHash and the convenient KeyHash. Nearly every class is a subclass of the CRUDHash which defines a CRUD (Create, Read, Update and Delete) model on top of Ruby's standard Hash making it possible to subclass and augment to fit any specific use case.

ruby-highline 1.7.10 — HighLine helps you build command-line interfaces

HighLine provides a high-level IO library that provides validation, type conversion, and more for command-line interfaces. HighLine also includes a menu system for providing multiple options to the user.

ruby-hoe 3.16.2 — Ruby project management helper

Hoe is a rake/rubygems helper for project Rakefiles. It helps manage, maintain, and release projects and includes a dynamic plug-in system allowing for easy extensibility. Hoe ships with plug-ins for all the usual project tasks including rdoc generation, testing, packaging, deployment, and announcement.

ruby-hoe-git 1.6.0 — Hoe plugins for tighter Git integration

This package provides a set of Hoe plugins for tighter Git integration. It provides tasks to automate release tagging and pushing and changelog generation.

ruby-http-cookie 1.0.3 — Handle HTTP Cookies based on RFC 6265

HTTP::Cookie is a Ruby library to handle HTTP Cookies based on RFC 6265. It has been designed with security, standards compliance and compatibility in mind, to behave just the same as today's major web browsers. It has built-in support for the legacy cookies.txt and cookies.sqlite formats of Mozilla Firefox.

ruby-httpclient 2.8.3 — Make HTTP requests with support for HTTPS, Cookies, authentication and more

The httpclient ruby library provides functionality related to HTTP. Compared to the net/http library, {httpclient

ruby-i18n 0.7.0 — Internationalization library for Ruby

Ruby i18n is an internationalization and localization solution for Ruby programs. It features translation and localization, interpolation of values to translations, pluralization, customizable transliteration to ASCII, flexible defaults, bulk lookup, lambdas as translation data, custom key/scope separator, custom exception handlers, and an extensible architecture with a swappable backend.

ruby-instantiator 0.0.6 — Instantiate an arbitrary Ruby class

Instantiator lets you instantiate an arbitrary Ruby class without knowing anything about the constructor.

ruby-introspection 0.0.4 — Dynamic inspection of the method hierarchy on a Ruby object

Introspection provides tools to inspect the hierarchy of method definitions on a Ruby object.

ruby-iruby 0.3 — Ruby kernel for Jupyter/IPython

This package provides a Ruby kernel for Jupyter/IPython frontends (e.g. notebook).

ruby-json 2.1.0 — JSON library for Ruby

This Ruby library provides a JSON implementation written as a native C extension.

ruby-json-pure 2.1.0 — JSON implementation in pure Ruby

This package provides a JSON implementation written in pure Ruby.

ruby-lemon 0.9.1 — Test framework correlating code structure and test unit

Lemon is a unit testing framework that enforces highly formal case-to-class and unit-to-method test construction. This enforcement can help focus concern on individual units of behavior.

ruby-libxml 3.0.0 — Ruby bindings for GNOME Libxml2

The Libxml-Ruby project provides Ruby language bindings for the GNOME Libxml2 XML toolkit.

ruby-listen 3.1.5 — Listen to file modifications

The Listen gem listens to file modifications and notifies you about the changes.

ruby-locale 2.1.2 — Ruby library providing basic localization APIs

Ruby-Locale is the pure ruby library which provides basic APIs for localization.

ruby-log4r 1.1.10 — Flexible logging library for Ruby

Comprehensive and flexible logging library written in Ruby for use in Ruby programs. It features a hierarchical logging system of any number of levels, custom level names, logger inheritance, multiple output destinations per log event, execution tracing, custom formatting, thread safteyness, XML and YAML configuration, and more.

ruby-lumberjack 1.0.12 — Logging utility library for Ruby

Lumberjack is a simple logging utility that can be a drop in replacement for Logger or ActiveSupport::BufferedLogger. It provides support for automatically rolling log files even with multiple processes writing the same log file.

ruby-mail 2.6.6 — Mail library for Ruby

Mail is an internet library for Ruby that is designed to handle email generation, parsing and sending. The purpose of this library is to provide a single point of access to handle all email functions, including sending and receiving emails. All network type actions are done through proxy methods to Net::SMTP, Net::POP3 etc.

Mail has been designed with a very simple object oriented system that really opens up the email messages you are parsing, if you know what you are doing, you can fiddle with every last bit of your email directly.

ruby-metaclass 0.0.4 — Ruby library adding metaclass method to all objects

Metaclass is a Ruby library adding a metaclass method to all Ruby objects.

ruby-method-source 0.9.0 — Retrieve the source code for Ruby methods

Method_source retrieves the source code for Ruby methods. Additionally, it can extract source code from Proc and Lambda objects or just extract comments.